通过conda安装纯净环境的cellchat
- 先安装好纯净环境的Seurat:https://limour.top/1619.html
- jupyter内核一般安装在:~/.local/share/jupyter/kernels/XXX
XXX文件夹内容示例:https://limour.lanzouo.com/iv1PP000ysyh - conda install -c conda-forge r-circlize=0.4.14
- conda install -c conda-forge r-devtools
- conda install -c bioconda bioconductor-biobase=2.54.0
- wget https://github.com/sqjin/CellChat/archive/refs/heads/master.zip -O CellChat-master.zip
- wget https://github.com/jokergoo/ComplexHeatmap/archive/refs/heads/master.zip -O ComplexHeatmap-master.zip
- 移除CellChat-master.zip里src目录下的*.so和*.o文件并重新打包
- R (注意不要进错环境,可以用绝对路径)
- install.packages(‘NMF’)
- devtools::install_local(‘ComplexHeatmap-master.zip’)
- devtools::install_local(‘CellChat-master.zip’)
通过conda安装纯净环境的cellchat
https://b.limour.top/1632.html